To illustrate the power of genome database netowrk, you need to have a look at biocyc page.
BioCyc is a collection of 371 Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism.
http://biocyc.org/
http://biocyc.org/
BioCyc Pathway/Genome DatabasesThe BioCyc databases are divided into three tiers, based on their quality.
Tier 2 and Tier 3 databases contain computationally predicted metabolic pathways, predictions as to which genes code for missing enzymes in metabolic pathways, and predicted operons.
BioCyc Tier 1: Intensively Curated Databases
The BioCyc Open Chemical Database is an open database of chemical compounds from other BioCyc databases. Because it contains chemical compounds only, it is not a Pathway/Genome Database.
Tier 2 and Tier 3 databases contain computationally predicted metabolic pathways, predictions as to which genes code for missing enzymes in metabolic pathways, and predicted operons.
BioCyc Tier 1: Intensively Curated Databases
Database | Scope | Highlights | |
EcoCyc | Escherichia coli K-12 Model-Organism Database | Literature curation of complete genomeInformation from 17,000 publicationsTranscriptional regulatory networkProtein complexesEnzyme and transporter functionsGene Ontology assignments | |
MetaCyc | Multiorganism Metabolic Pathway and Enzyme Database | 1,100 metabolic pathwaysPathways elucidated from 1,500 organismsExtensive commentary and references |
The BioCyc Open Chemical Database is an open database of chemical compounds from other BioCyc databases. Because it contains chemical compounds only, it is not a Pathway/Genome Database.
The comparison of Urea cycle: pathway is possible between Homo Sapiens and E. coli O157:H7 EDL933 Pathway: urea cycle.
I did a cross species comparison between the two for a pathway, and I could choose any genome database
E. coli O157:H7 EDL933 Pathway: urea cycle
Homo Sapiens: Urea cycle pathway
The genes/enymes for Homosapiens
EC# 6.3.4.16
carbamoyl-phosphate synthase (ammonia), mitochondrial precursor: CPS1
EC# 2.1.3.3
ornithine carbamoyltransferase, mitochondrial precursor: OTC
EC# 6.3.4.5
argininosuccinate synthase: ENSG00000165232 argininosuccinate synthase: ENSG00000139130 argininosuccinate synthase: ENSG00000179595 argininosuccinate synthase: ASS argininosuccinate synthase: ENSG00000128605 argininosuccinate synthase: ENSG00000180191 argininosuccinate synthase: ENSG00000176192
EC# 4.3.2.1
argininosuccinate lyase: ENSG00000099934 argininosuccinate lyase: ASL
EC# 3.5.3.1
arginase II, mitochondrial precursor: ARG2 arginase 1: ARG1
The genes/enymes for Ecoli
EC# 6.3.4.16
None
EC# 2.1.3.3
ornithine carbamoyltransferase 1: argI
EC# 6.3.4.5
argininosuccinate synthetase: argG
EC# 4.3.2.1
argininosuccinate lyase: argH
EC# 3.5.3.1
None
There is a visible similarity between the two organisims and their functions for this pathway.
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